Sampling methods and approaches to inform standardized detection of marine alien fouling species on recreational vessels.

Recreational vessels are important contributors to the spread of marine alien species, particularly in relation to secondary spread within novel regions. As such, these vessels should be considered a monitoring priority. The aim of this study was to identify a preferred method for monitoring recreational vessels for alien species, while simultaneously developing a framework that enables managers to objectively choose the most effective sampling approach given their financial constraints. Divers and a remotely operated vehicle (ROV) were considered in relation to four sampling approaches i.e. meanders, transects, inspection of niche areas and the collection of quadrats. Each was applied to the same 53 vessels which represented a spectrum of hull fouling cover. The most effective methods were diver scrape quadrats (Range of alien species numbers per quadrat: 0-9, Total alien species: 20) and inspections of niche areas (Range of alien species numbers: 0-5, Total alien species: 9). All methods employed using an ROV had low efficacy and incurred high costs. While scrape samples were one of the most expensive methods, this was offset by the lowest cost per species detected. Thus, it is recommended that monitoring programmes utilize scrape samples and niche area inspections, but when faced with financial constraints, diver meanders and niche inspections offer sound alternatives for detecting alien species.

A framework for the development of a global standardised marine taxon reference image database (SMarTaR-ID) to support image-based analyses.

Video and image data are regularly used in the field of benthic ecology to document biodiversity. However, their use is subject to a number of challenges, principally the identification of taxa within the images without associated physical specimens. The challenge of applying traditional taxonomic keys to the identification of fauna from images has led to the development of personal, group, or institution level reference image catalogues of operational taxonomic units (OTUs) or morphospecies. Lack of standardisation among these reference catalogues has led to problems with observer bias and the inability to combine datasets across studies. In addition, lack of a common reference standard is stifling efforts in the application of artificial intelligence to taxon identification. Using the North Atlantic deep sea as a case study, we propose a database structure to facilitate standardisation of morphospecies image catalogues between research groups and support future use in multiple front-end applications. We also propose a framework for coordination of international efforts to develop reference guides for the identification of marine species from images. The proposed structure maps to the Darwin Core standard to allow integration with existing databases. We suggest a management framework where high-level taxonomic groups are curated by a regional team, consisting of both end users and taxonomic experts. We identify a mechanism by which overall quality of data within a common reference guide could be raised over the next decade. Finally, we discuss the role of a common reference standard in advancing marine ecology and supporting sustainable use of this ecosystem.

The Villefranche Strombidium sulcatum: A review.

The marine oligotrich ciliate Strombidium sulcatum, the best known marine oligotrich of the marine microozoplankton, was first cultured in Villefranche-sur-Mer 35 years ago. Cultures were maintained from 1983 to 2003 and used in 22 studies investigating a very wide variety of questions. Here we review the major findings of these studies and underline their contributions to our knowledge of planktonic ciliate ecology and microbial ecology in general. We conclude with the observation that while ecophysiology has apparently fallen out of fashion, culture work will likely return as an invaluable resource in our present 'omics' era.

Lessons from Philippines MPA Management: Social Ecological Interactions, Participation, and MPA Performance.

International interest in increasing marine protected area (MPA) coverage reflects broad recognition of the MPA as a key tool for marine ecosystems and fisheries management. Nevertheless, effective management remains a significant challenge. The present study contributes to enriching an understanding of best practices for MPA management through analysis of archived community survey data collected in the Philippines by the Learning Project (LP), a collaboration with United States Coral Triangle Initiative (USCTI), United States Agency for International Development (USAID), and partners. We evaluate stakeholder participation and social ecological interactions among resource users in MPA programs in the Palawan, Occidental Mindoro, and Batangas provinces in the Philippines. Analysis indicates that a complex suite of social ecological factors, including demographics, conservation beliefs, and scientifically correct knowledge influence participation, which in turn is related to perceived MPA performance. Findings indicate positive feedbacks within the system that have potential to strengthen perceptions of MPA success. The results of this evaluation provide empirical reinforcement to current inquiries concerning the role of participation in influencing MPA performance.

Effects of sample cleaning and storage on the elemental composition of shark vertebrae.

RATIONALE: Application of vertebral chemistry in elasmobranchs has the potential to progress our understanding of individual migration patterns and population dynamics. However, the influence of handling artifacts such as sample cleaning and storage on vertebral chemistry is unclear and requires experimental investigation. METHODS: Vertebrae centra from blacktip sharks (Carcharhinus limbatus) were cleaned with bleach (NaOCl) for 5 minutes (min), 1 hour (h) and 24 (h) in a cleaning experiment and stored frozen, in 70% ethanol, and 10% formalin treatments for 20 days in a storage experiment. Element concentrations (Li, Na, Mg, Mn, Cu, Zn, Sr, Ba, Pb) were quantified in the outer edges of vertebrae centra using laser ablation inductively coupled plasma mass spectrometry and the [element:Ca] molar ratios were compared among treatments and individual sharks. RESULTS: Bleach cleaning significantly increased [Na:Ca] and formalin storage decreased [Na:Ca] and [Mg:Ca], but ethanol storage did not affect any [element:Ca] ratios. Vertebrae edge [Sr:Ca], [Ba:Ca] and [Mn:Ca] varied among individual sharks, potentially reflecting different environments that they had previously inhabited. CONCLUSIONS: This study shows how archiving methods for vertebrae cartilage can affect primary element:Ca compositions. We demonstrate greatest element:Ca stabilities for vertebrae with limited bleach exposure that are either stored in ethanol or frozen, supporting the use of comparably archived sample sets in future elemental studies.

Calibration Techniques for Accurate Measurements by Underwater Camera Systems.

Calibration of a camera system is essential to ensure that image measurements result in accurate estimates of locations and dimensions within the object space. In the underwater environment, the calibration must implicitly or explicitly model and compensate for the refractive effects of waterproof housings and the water medium. This paper reviews the different approaches to the calibration of underwater camera systems in theoretical and practical terms. The accuracy, reliability, validation and stability of underwater camera system calibration are also discussed. Samples of results from published reports are provided to demonstrate the range of possible accuracies for the measurements produced by underwater camera systems.

Determining the detection thresholds for harbor porpoise clicks of autonomous data loggers, the Timing Porpoise Detectors.

Timing Porpoise Detectors (T-PODs, Chelonia Ltd.) are autonomous passive acoustic devices for monitoring odontocetes. They register the time of occurrence and duration of high frequency pulsed sounds as possible odontocetes echolocation clicks. Because of evolution, five T-POD versions exist. Although the manufacturer replaced those by a digital successor, the C-POD, T-PODs are still used, and data from many field studies exist. Characterizing the acoustic properties of T-PODs enables the interpretation of data obtained with different devices. Here, the detection thresholds of different T-POD versions for harbor porpoise clicks were determined. While thresholds among devices were quite variable in the first T-POD generations, they became more standardized in newer versions. Furthermore, the influence of user-controlled settings on the threshold was investigated. From version 3 on, the detection threshold was found to be easily adjustable with version-dependent setting options "minimum intensity" and "sensitivity," enabling the presetting of standard thresholds. In version 4, the setting "click bandwidth" had a strong influence on the detection threshold, while "selectivity" in version 3 and "noise adaptation = ON" or "OFF" in version 4 hardly influenced thresholds obtained in the tank tests. Nevertheless, the latter setting may influence thresholds in a complex acoustic environment like the sea.

Methodology and results of calibration of tonal click detectors for small odontocetes (C-PODs).

Static acoustic monitoring (SAM) is one major technology for observing small cetacean species. Automatic click loggers deployed for long time periods (>2 months) with a single hydrophone are a standard solution. Acoustic properties, like detection thresholds of these instruments, are essential for interpretation of results, but have nevertheless received little attention. A methodology for calibrating tonal click detectors in small tanks consisting of the determination of the horizontal directivity pattern and detection thresholds including a transfer function is presented. Two approaches were tested to determine detection thresholds by (a) determining the 50% detection threshold and (b) fitting a linear regression model to the recorded relative amplitudes. The tests were carried out on C-PODs (Cetacean PODs, tonal click detectors), the most commonly used instrument for SAM in Europe. Directivity and threshold were tested between 60 and 150 kHz. Directivity showed a maximum variation of 8.5 dB in the horizontal plane. Sensitivity is highest between 80 and 130 kHz and linear (± 3 dB) in this frequency range for most of the instruments tested. C-PODs have a detection threshold (calculated with the linear model) of 114.5 ± 1.2 (standard deviation) dB re 1 µPa peak-peak at 130 kHz.

The effects of freeze/thaw periods and drying methods on isotopic and elemental carbon and nitrogen in marine organisms, raising questions on sample preparation.

Stable isotopes are an increasingly important tool in trophic linkage ecological studies. In studies of large marine animals, isotopic sampling is often given secondary priority to sampling for diversity and biomass aspects. Consequently, isotopic samples are frequently collected subsequent to repeated freezing and thawing of animals, and the results of these studies are often based on the assumption that this pre-treatment does not affect the isotopic values. Our study tested this assumption and examined the difference between oven- and freeze-drying on isotopic values and elemental carbon-to-nitrogen (C:N) ratios. The values for δ(15)N and δ(13)C, percentage nitrogen and carbon, and the C:N ratios were determined from the tissues of six marine species, including invertebrates and fish, as (1) fresh samples, (2) samples thawed once, and (3) samples thawed twice. The drying method, thawing treatment and their interaction did significantly affect the δ(15)N and δ(13)C isotope values for all species. Oven-dried samples had slightly higher δ(13)C and δ(15)N values than freeze-dried samples, although not significant in most instances. For most species, oven-drying produced lower carbon and nitrogen percentage than freeze-drying for samples that had been thawed once, but the C:N ratio was unaffected by the drying method. Repeated freezing and thawing did not affect the isotope values, but it did decrease the percentage carbon and nitrogen for both desiccation methods. We recommend drying samples from fresh wherever possible, and careful choice of desiccation method in light of the fact that most lipid models are based on oven-dried samples and oven-drying could cause enrichment of (15)N or (13)C through evaporation of volatile compounds richer in lighter isotopes such as some lipids. Finally, we recommend that further studies on the specific effects of freezing and desiccation on elasmobranchs is needed. Overall we recommend the use of freeze-drying when possible and to use the samples from freshly caught organisms.

Critical appraisal on the identification of Reference Conditions for the evaluation of ecological quality status along the Emilia-Romagna coast (Italy) using M-AMBI.

According to the European Water Framework Directive, the ecological status (ES) of a water body is determined by comparing observation data with undisturbed Reference Conditions (RCs). Defining RCs is crucial when evaluating the ES of a water body as it strongly affects the final outcome of any index application. Identifying RCs by observing real sites is not feasible in many marine environments, such as the Emilia-Romagna coast (Italy, N-Adriatic Sea). We used a statistical approach on a large dataset to derive RCs for the application of the benthic index M-AMBI in this area. We then applied M-AMBI to samples collected along a gradient of presumed environmental disturbance. The results put 14.8% of the Emilia-Romagna samples in "High" ES, 60.2% in "Good", 23.0% in "Moderate" and 2.0% in "Poor", showing a spatial gradient of improving quality. These results are in agreement with the extensive ecological knowledge available for this area.

Passing the panda standard: a TAD off the mark?

Tilapia, a tropical freshwater fish native to Africa, is an increasingly important global food commodity. The World Wide Fund for Nature (WWF), a major environmental nongovernmental organization, has established stakeholder dialogues to formulate farm certification standards that promote "responsible" culture practices. As a preface to its "tilapia aquaculture dialogue," the WWF for Nature commissioned a review of potential certification issues, later published as a peer-reviewed article. This article contends that both the review and the draft certification standards subsequently developed fail to adequately integrate critical factors governing the relative sustainability of tilapia production and thereby miss more significant issues related to resource-use efficiency and the appropriation of ecosystem space and services. This raises a distinct possibility that subsequent certification will promote intensive systems of tilapia production that are far less ecologically benign than existing widely practiced semi-intensive alternatives. Given the likely future significance of this emergent standard, it is contended that a more holistic approach to certification is essential.

Benthic indicators: From subjectivity to objectivity - Where is the line?

Over the last few years, the interest in using benthic indicators to assess marine environments has increased dramatically after a rather long period of relative stagnation, mostly due to the need to assess the status of coastal marine waters required by North American and European regulations. Numerous papers on this topic have been published in the domain of ecology, using a variety of different terms to refer to two categories of information: benthic species and the status of benthic communities. Nowadays, the abundant literature on these two categories makes it possible to comment on (1) the definition of the different terms used by benthic researchers, (2) the current increase of papers of rising complexity about benthic indicators, and (3) the subjectivity and objectivity involved in using benthic indicators. Faced with the increase in the number of methods, we recommend pragmatism and thus the transfer of simple methods to the research consultancies that are responsible for assessing benthic quality in numerous impact studies. Using certain procedures, such as the "sentinel species", the best professional judgement (BPJ) and taxonomic sufficiency (TS), should clearly be encouraged.

The work of the OIE Aquatic Animal Health Standards Commission.

Founded in 1960 as the Fish Diseases Commission, the Aquatic Animal Health Standards Commission is currently composed of five members elected by the OIE International Committee on a three-year basis. Its remit covers diseases of fish, molluscs and crustaceans. OIE stipulates that Commission members should be internationally recognised specialists in the fields of methods for surveillance, diagnosis and prevention of infectious aquatic animal diseases and have extensive international experience, at the regional or global level. The Commission is responsible for developing the international standards of the Aquatic Code and the Aquatic Manual, very ably supported by various OIE Ad hoc Groups and the designated experts at the OIE Reference Laboratories for aquatic animal diseases. The latest editions of the Aquatic Code and the Aquatic Manual published in 2006 incorporate several important modifications including several changes to the list of diseases. Work has commenced in new areas such as aquatic animal welfare and an assessment of whether amphibian diseases should be included in the work of the Commission. Continuing efforts are being made to encourage enhanced involvement of veterinary authorities in aquatic animal health and to improve cooperation between veterinary and other authorities with competence for aquatic animal health.

Zoobenthos as indicators of ecological status in coastal brackish waters: a comparative study from the Baltic Sea.

A new method for classifying soft-bottom zoobenthic assemblages along the Finnish coasts (northern Baltic Sea) is presented and tested against traditional physicochemical monitoring data in the complex Archipelago Sea. Although multivariate methods for assessing the state of the marine environment have become widely used, few numerical indices can operate over a wide salinity range. We compare indices currently in use and propose a new index, BBI (brackish water benthic index), for the low-saline and species-poor Baltic coastal waters. BBI offers a salinity-corrected tool for classification of the soft-bottom zoobenthos under the demands of the European Union Water Framework Directive.

Benthic biodiversity indices versus salinity gradient in the southern Baltic Sea.

The need to assess the environmental status of marine and coastal waters according to the EU Water Framework Directive (WFD) encouraged the design of specific biotic indices to evaluate the response of benthic communities to human-induced changes in water quality. In the present study three of these indices, the traditional Shannon Wiener Index (H') and the more recently published AMBI (AZTI' Marine Biotic Index) and BQI (Benthic Quality Index), were tested along a salinity gradient in the southern Baltic Sea. The comparison of the three indices demonstrates that in the southern Baltic Sea the ecological quality (EcoQ) classification based on macrozoobenthic communities as indicator greatly depends on the biotic index chosen. We found a significant positive relation between species number, H', BQI and salinity resulting in EcoQ status of "Bad", "Poor" or "Moderate" in areas with a salinity value below 10 psu. The AMBI was less dependent on salinity but appear to partly overestimate the EcoQ status. Presently none of these biotic indices appear to be adjusted for application in a gradient system as given in the southern Baltic Sea. A potential approach describing how to overcome this limitation is discussed.

A review of surface roughness in antifouling coatings illustrating the importance of cutoff length.

Surface roughness (SR) can affect the hydrodynamic performance of antifouling (AF) coatings and influence the settlement behaviour of fouling larvae, which makes it an important parameter in the evaluation of novel coatings. This paper reviews the causes and consequences of SR in the shipping industry, the methodology used for measuring it, and the importance of measuring and reporting it correctly. SR is a parameter that originates from marine engineering, but has been used extensively by marine scientists to characterise novel coatings and to investigate microtopographies that might inhibit settlement behaviour. One of the integral components of the SR measurement is the use of a cutoff filter. This is a short-pass filter that lets the high wave-number components through and thus separates the waviness from the roughness. Depending on the length of this filter, roughness at different levels of magnification can be investigated. Much of the published work on SR of AF coatings makes no mention of cutoff length, so that the results cannot be compared. It is suggested that an international standard is needed and that if more researchers were aware of the significance of stating cutoff length when reporting SR, more interdisciplinary work between biologists, engineers and material scientists would be possible in this field.

An index of biotic integrity based on the summer polyhaline zooplankton community of the Chesapeake Bay.

A zooplankton index of biotic integrity was developed for the polyhaline waters of the Chesapeake Bay using data from a long-term environmental assessment program in which both zooplankton and water quality were regularly monitored. Summer (July to September) sampling events were classified as either coming from impaired or reference (least-impaired) conditions based on water quality conditions. Seventeen zooplankton community metrics were evaluated under these criteria and nine were chosen for a composite index. These were the Simpson diversity index, and abundance of barnacle larvae, rotifers, cladocerans, copepods, total mesozooplankton, and predators. The composite index of biotic integrity correctly classified about 94% of the impaired samples and about 82% of the reference samples. Average classification efficiency was 88%. This index appears to be an effective measure of eutrophication for the summer polyhaline waters of the Chesapeake Bay ecosystem.